STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ56970.1Pilus assembly protein Flp/PilA. (55 aa)    
Predicted Functional Partners:
SEQ67050.1
Pilus assembly protein CpaB.
 
  
 0.754
SEQ57113.1
Pilus assembly protein CpaE.
 
  
 0.745
SEQ67119.1
Pilus assembly protein CpaE.
 
  
 0.740
SEQ57048.1
Pilus assembly protein CpaB.
 
  
 0.723
SER23988.1
Pilus assembly protein CpaB.
 
  
 0.718
SEQ57021.1
Prepilin peptidase CpaA.
  
  
 0.687
SEQ56887.1
Protein of unknown function.
 
     0.662
SEQ67291.1
Flp pilus assembly protein TadG.
 
  
 0.657
SEQ56939.1
Protein of unknown function.
 
     0.654
SEQ57001.1
Pilus assembly protein Flp/PilA.
 
    
0.611
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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