STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ57167.1Tight adherence protein B. (310 aa)    
Predicted Functional Partners:
SEQ57197.1
Tight adherence protein C.
 
  
 0.979
SEQ57113.1
Pilus assembly protein CpaE.
 
  
 0.973
SEQ57142.1
Pilus assembly protein CpaF.
 
  
 0.971
SEQ57048.1
Pilus assembly protein CpaB.
 
  
 0.944
SEQ67119.1
Pilus assembly protein CpaE.
 
  
 0.920
SEQ67201.1
Tight adherence protein C.
 
  
 0.913
SER23886.1
Tight adherence protein C.
 
  
 0.913
SEQ57081.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.909
SEQ67050.1
Pilus assembly protein CpaB.
 
  
 0.890
SER23988.1
Pilus assembly protein CpaB.
 
  
 0.887
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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