STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ78741.1UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. (290 aa)    
Predicted Functional Partners:
SEQ78684.1
PTS IIA-like nitrogen-regulatory protein PtsN.
  
  
 0.920
SER19045.1
Ribonuclease G.
 
 
 
 0.897
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.882
SEQ78763.1
PTS system, ascorbate-specific IIA component.
 
   
 0.850
SEQ78810.1
Phosphocarrier protein.
  
  
 0.837
SEQ78662.1
Putative sigma-54 modulation protein.
 
  
 0.785
SEQ78711.1
HPr Serine kinase C-terminal domain-containing protein.
     
 0.701
SER03212.1
Hypothetical protein.
      0.665
SEQ98470.1
Nucleotidyl transferase.
    
  0.661
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.625
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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