STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ90469.1Porin. (410 aa)    
Predicted Functional Partners:
SEP66797.1
Sulfur-oxidizing protein SoxY.
  
     0.697
SEP67712.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.687
SEP66718.1
Cytochrome c-550 PedF.
  
    0.667
SEP67748.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.644
SEP74270.1
Protein of unknown function.
  
    0.627
SEP66835.1
Uncharacterized sulfatase.
  
     0.580
SEP74369.1
Hypothetical protein.
  
    0.576
SEQ42026.1
Phospholipid-binding lipoprotein MlaA.
    
 
 0.573
SEP66686.1
Alcohol dehydrogenase (cytochrome c).
  
    0.549
SEQ56726.1
Sulfatase.
  
     0.544
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.