STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER03024.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (295 aa)    
Predicted Functional Partners:
SEP99208.1
2-octaprenylphenol hydroxylase.
   
 0.589
SEQ00225.1
Salicylate hydroxylase.
   
 0.589
SEQ38049.1
Protein of unknown function.
   
 0.589
SEQ74947.1
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.
   
 0.589
SEP68927.1
Dihydroflavonol-4-reductase.
  
 0.548
SER03048.1
Transcriptional regulator, AraC family.
       0.544
SER02968.1
Proton-dependent oligopeptide transporter, POT family.
 
 
 
 0.543
SER02997.1
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
       0.531
SEQ34193.1
Uncharacterized membrane protein YhhN.
 
     0.514
SEQ14066.1
Alkane 1-monooxygenase.
 
 
 0.507
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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