STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER15542.1Membrane associated serine protease, rhomboid family. (194 aa)    
Predicted Functional Partners:
tatA
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.923
SEQ07095.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.892
SEQ26535.1
Sec-independent protein translocase protein TatB.
   
 
 0.771
SEQ82428.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.721
SEQ78414.1
Membrane protease subunit HflC; HflC and HflK could regulate a protease.
   
 0.716
SEQ78440.1
Membrane protease subunit HflK; HflC and HflK could encode or regulate a protease.
   
 0.716
ftsH
Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     
 0.708
SER15515.1
CBS domain-containing protein.
       0.591
SER11795.1
Rhodanese-related sulfurtransferase.
  
  
 0.550
SER10153.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.542
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.