STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARC51185.1Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (762 aa)    
Predicted Functional Partners:
ARC49931.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.707
A6J88_10335
Transposase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.672
ARC50046.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
A6J88_13570
Transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.662
ARC51906.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.655
ARC50953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.639
ARC51348.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.627
ARC50822.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.603
ARC51132.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
A6J88_07720
Hypothetical protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
Your Current Organism:
Neisseria sicca
NCBI taxonomy Id: 490
Other names: ATCC 29256, CCUG 23929, CCUG 24959, CIP 103345, DSM 17713, Diplococcos pharyngis siccus, Diplococcus siccus, LMG 5290, LMG:5290, N. sicca, NRL 30,016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.