STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI03780.1Uncharacterized protein. (53 aa)    
Predicted Functional Partners:
SSCI44230.1
Ubiquitin-like domain-containing protein.
   
    0.839
SSCI16250.1
Related to ubiquitin-like protein Hub1.
   
    0.788
SSCI35700.1
Sm domain-containing protein.
   
    0.724
SSCI65040.1
Related to UMP1-proteasome maturation factor.
   
    0.717
SSCI03190.1
Uncharacterized protein.
   
    0.654
SSCI25100.1
Probable Small nuclear ribonucleoprotein F.
   
  
 0.500
SSCI26000.1
Uncharacterized protein.
   
  
 0.498
SSCI55310.1
Uncharacterized protein.
   
    0.481
SSCI48230.1
4F5 domain-containing protein.
   
    0.477
SSCI20950.1
Probable RPL34B-ribosomal protein L34.e.
   
    0.470
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.