STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI36400.1Related to Cleavage stimulation factor. (389 aa)    
Predicted Functional Partners:
SSCI04440.1
Related to RNA14-component of pre-mRNA 3`-end processing factor CF I.
   
 0.998
SSCI20640.1
CPSF_A domain-containing protein.
    
 0.990
SSCI64860.1
Related to YSH1-component of pre-mRNA polyadenylation factor PF I.
   
 0.990
SSCI27120.1
CID domain-containing protein.
    
 0.989
SSCI49930.1
mRNA cleavage and polyadenylation factor SSCI49930.1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
   
 0.989
SSCI40050.1
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.988
SSCI41540.1
Related to Symplekin.
   
 0.988
SSCI15110.1
Related to Cleavage and polyadenylation specificity factor.
   
 0.985
SSCI80080.1
Related to poly(A) binding protein II.
  
 0.982
SSCI03760.1
Related to PFS2-polyadenylation factor I subunit 2.
    
 0.981
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.