STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI41380.1DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1510 aa)    
Predicted Functional Partners:
SSCI63080.1
Structural maintenance of chromosomes protein.
   
 
 0.936
SSCI14130.1
Uncharacterized protein.
   
 
 0.930
SSCI14140.1
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
   
 
 0.930
SSCI59330.1
Uncharacterized protein.
   
 
 0.878
SSCI86790.1
Structural maintenance of chromosomes protein.
   
 
 0.874
SSCI58880.1
Related to SMT3 ubiquitin-like protein.
    
 0.865
SSCI67180.1
Probable ubiquitin--protein ligase hus5; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.861
SSCI12590.1
Related to DNA repair protein rad18.
   
 
 0.858
SSCI43550.1
Ubiquitin-like domain-containing protein.
    
 0.857
SSCI13690.1
Uncharacterized protein.
    
 0.838
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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