STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI45290.1JmjC domain-containing protein. (853 aa)    
Predicted Functional Partners:
SSCI14380.1
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.757
SSCI61720.1
NET domain-containing protein.
    
 
 0.706
SSCI61730.1
Bromo domain-containing protein.
    
 
 0.706
SSCI50340.1
Uncharacterized protein.
    
 
 0.660
SSCI50330.1
Rieske domain-containing protein.
    
 
 0.660
SSCI14390.1
Histone H3; Belongs to the histone H3 family.
    
 0.645
SSCI50150.1
Histone H3; Belongs to the histone H3 family.
    
 0.645
SSCI02520.1
Probable histone 3.
    
 0.645
SSCI55140.1
DUF2236 domain-containing protein.
    
 0.627
SSCI74010.1
Related to pre-mRNA splicing factor U2AF large chain.
    
 
 0.506
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.