STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI49270.1Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
SSCI76360.1
Related to TRF4-topoisomerase I-related protein.
    
 
 0.498
SSCI01790.1
Related to RPB3-DNA-directed RNA polymerase II chain.
    
   0.446
SSCI56980.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
   0.446
SSCI63390.1
SAP domain-containing protein.
    
 
 0.446
SSCI69470.1
Uncharacterized protein.
    
   0.446
SSCI05820.1
RNase III domain-containing protein.
    
 
 0.439
SSCI29390.1
Related to DNA-directed RNA polymerase 13.3K chain.
    
 
 0.419
SSCI62510.1
Uncharacterized protein.
    
 
 0.417
SSCI62470.1
Uncharacterized protein.
    
 
 0.417
SSCI62540.1
Uncharacterized protein.
    
 
 0.417
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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