STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI19090.1Uncharacterized protein. (167 aa)    
Predicted Functional Partners:
SSCI19080.1
Uncharacterized protein.
 
      0.890
SSCI14130.1
Uncharacterized protein.
    
 
 0.736
SSCI14140.1
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
    
 
 0.736
SSCI72130.1
ERCC4 domain-containing protein.
   
 
 0.712
SSCI68490.1
Related to ATP-dependent DNA helicase II, 80 kDa subunit.
    
 0.705
SSCI08180.1
SAP domain-containing protein.
     
 0.704
SSCI13260.1
Related to MUS81-endonuclease involved in DNA repair and replication fork stability.
   
 
 0.646
SSCI79120.1
Uncharacterized protein.
   
 
 0.606
SSCI41980.1
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
     
 0.587
SSCI82840.1
HRDC domain-containing protein.
     
 0.587
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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