STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI44480.1Uncharacterized protein. (215 aa)    
Predicted Functional Partners:
SSCI44490.1
Uncharacterized protein.
 
      0.634
SSCI44390.1
Uncharacterized protein.
    
 0.603
SSCI81950.1
Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]
    
 0.586
SSCI48780.1
Related to SPT3-general transcriptional adaptor or co-activator.
    
 0.584
SSCI32470.1
Uncharacterized protein.
    
 0.578
SSCI47450.1
Related to SGF73-SAGA complex subunit.
    
 0.563
SSCI50070.1
Uncharacterized protein.
    
 0.557
SSCI28800.1
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.550
SSCI75920.1
Uncharacterized protein.
    
 0.547
SSCI29470.1
Uncharacterized protein.
    
 0.540
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.