STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI36280.1HRDC domain-containing protein. (352 aa)    
Predicted Functional Partners:
SSCI84310.1
Uncharacterized protein.
   
 0.908
SSCI17940.1
RECA_2 domain-containing protein.
   
 0.874
SSCI71780.1
Uncharacterized protein.
   
 0.873
SSCI40670.1
Related to MRE11-DNA repair and meiotic recombination protein.
   
 0.873
SSCI82170.1
DUF1767 domain-containing protein.
    
 0.867
SSCI13260.1
Related to MUS81-endonuclease involved in DNA repair and replication fork stability.
   
 0.861
SSCI17930.1
Uncharacterized protein; Belongs to the RecA family.
   
 0.860
SSCI29280.1
Uncharacterized protein.
   
 0.850
SSCI76550.1
RECA_2 domain-containing protein.
   
 0.848
SSCI08270.1
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.844
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.