STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI85610.1Probable SKI2-antiviral protein and putative helicase. (1287 aa)    
Predicted Functional Partners:
SSCI81550.1
Related to antiviral protein SKI3.
   
 0.998
SSCI08040.1
WD_REPEATS_REGION domain-containing protein.
    
 0.997
SSCI67690.1
Uncharacterized protein.
   
 0.968
SSCI51070.1
Related to CSL4-exosome core component.
   
 0.952
SSCI83920.1
Reverse transcriptase domain-containing protein.
   
 0.950
SSCI19220.1
Uncharacterized protein.
    
 0.949
SSCI81520.1
Related to exosome complex exonuclease.
   
 0.949
SSCI53830.1
Related to RRP46-Exosome non-catalytic core component.
    
 0.944
SSCI22410.1
Related to Exosome complex exonuclease RRP43.
   
 0.940
SSCI52080.1
Probable exosome complex exonuclease rrp41.
    
 0.939
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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