STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI86940.1Probable Splicing factor 3b, subunit 2. (588 aa)    
Predicted Functional Partners:
SSCI18260.1
Uncharacterized protein.
    
 0.998
SSCI12700.1
Uncharacterized protein.
    
 0.998
SSCI83960.1
Uncharacterized protein.
   
 0.998
SSCI82070.1
Uncharacterized protein.
   
 0.998
SSCI58950.1
Related to PRP11-pre-mRNA splicing factor.
   
 0.995
SSCI82820.1
Matrin-type domain-containing protein.
   
 0.995
SSCI06670.1
Uncharacterized protein.
    
 0.994
SSCI77730.1
Related to U2 snRNP protein A.
   
 0.994
SSCI21990.1
Related to Splicing factor 3 subunit 1.
   
 0.992
SSCI43530.1
Small nuclear ribonucleoprotein Sm D2.
    
 0.992
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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