STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI11230.1Uncharacterized protein. (77 aa)    
Predicted Functional Partners:
SSCI13810.1
Related to 80 kDa nuclear cap binding protein.
   
 0.988
SSCI42530.1
Small nuclear ribonucleoprotein Sm D3.
   
 0.974
SSCI37410.1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.972
SSCI13800.1
Related to Arsenite-resistance protein 2 (ASR2).
    
 0.970
SSCI60640.1
Related to mRNA export factor mex67.
    
 0.970
SSCI35700.1
Sm domain-containing protein.
   
 0.969
SSCI25100.1
Probable Small nuclear ribonucleoprotein F.
   
  0.963
SSCI67690.1
Uncharacterized protein.
    
 0.962
SSCI43530.1
Small nuclear ribonucleoprotein Sm D2.
   
 0.960
SSCI40110.1
Probable CDC40-Pre-mRNA splicing factor important for catalytic step II.
    
 0.956
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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