STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI17750.1SRP40_C domain-containing protein. (65 aa)    
Predicted Functional Partners:
SSCI26820.1
Probable NOP58-required for pre-18S rRNA processing.
   
 
 0.952
SSCI28460.1
Nop domain-containing protein.
   
 
 0.930
SSCI50920.1
PUA domain-containing protein.
   
 
 0.916
SSCI66890.1
Uncharacterized protein.
   
 
 0.898
SSCI17760.1
Uncharacterized protein.
 
      0.839
SSCI46140.1
Uncharacterized protein.
   
 
 0.836
SSCI43080.1
Related to MAK21-protein required for 60S ribosomal subunit biogenesis.
   
   0.807
SSCI64830.1
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.786
SSCI74890.1
Related to tRNA pseudouridine synthase B.
   
 
 0.783
SSCI86040.1
Brix domain-containing protein.
   
   0.782
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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