STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI55150.1BP28CT domain-containing protein. (2136 aa)    
Predicted Functional Partners:
SSCI14000.1
WD_REPEATS_REGION domain-containing protein.
   
 0.999
SSCI26820.1
Probable NOP58-required for pre-18S rRNA processing.
   
 0.999
SSCI50840.1
Uncharacterized protein.
   
 0.999
SSCI37190.1
WD_REPEATS_REGION domain-containing protein.
   
 0.999
SSCI04020.1
Uncharacterized protein.
   
 0.999
SSCI70300.1
Related to UTP15-nucleolar protein, component of the small subunit processome.
   
 0.999
SSCI55290.1
Uncharacterized protein.
   
 0.999
SSCI69970.1
Related to NAN1-U3 snoRNP protein.
   
 0.999
SSCI03300.1
WD_REPEATS_REGION domain-containing protein.
   
 0.998
SSCI34780.1
Related to UTP18-possible U3 snoRNP protein involved in maturation of pre-18S rRNA.
   
 0.998
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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