STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI85200.1Nop domain-containing protein. (537 aa)    
Predicted Functional Partners:
SSCI08660.1
Uncharacterized protein.
   
 0.996
SSCI59580.1
Related to PRP3-essential splicing factor.
   
 0.996
SSCI41950.1
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.995
SSCI15070.1
WD_REPEATS_REGION domain-containing protein.
   
 0.995
SSCI11030.1
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.995
SSCI26620.1
Probable pre-mRNA splicing factor prp1.
   
 0.994
SSCI35580.1
MPN domain-containing protein.
    
 0.993
SSCI22810.1
Probable ATP dependent RNA helicase.
    
 0.991
SSCI28600.1
Probable ribosomal elongation factor EF-2.
   
 0.988
SSCI00290.1
MFAP1 domain-containing protein.
   
 0.986
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
Server load: low (20%) [HD]