STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI37170.1Rab-GAP TBC domain-containing protein. (874 aa)    
Predicted Functional Partners:
SSCI66950.1
Uncharacterized protein.
   
 0.914
SSCI56480.1
Autophagy-related protein.
   
 0.888
SSCI50200.1
Uncharacterized protein.
    
 0.849
SSCI00300.1
Probable GTPase Rab7 protein.
    
 0.767
SSCI82050.1
Probable GTP-binding protein ypt1.
     
 0.731
SSCI86240.1
Uncharacterized protein.
    
 0.697
SSCI78980.1
Related to NCA2-control of mitochondrial synthesis of Atp6p and Atp8p.
    
 0.697
SSCI36070.1
Uncharacterized protein.
    
 0.647
SSCI33460.1
Probable GTP-binding protein rab-4b.
    
 0.647
SSCI14300.1
40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.
 
      0.620
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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