STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI71540.1WD_REPEATS_REGION domain-containing protein. (2199 aa)    
Predicted Functional Partners:
SSCI55940.1
Related to PEP5-vacuolar biogenesis protein.
    
 
 0.986
SSCI57290.1
Related to DigA protein.
    
 
 0.986
SSCI06700.1
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.974
SSCI60440.1
Related to TGF beta receptor associated protein-1.
   
 
 0.945
SSCI71450.1
Related to Vam6/Vps39-like protein involved in vacuolar morphogenesis.
   
 
 0.944
SSCI27510.1
Related to vacuolar protein sorting 16.
    
 
 0.933
SSCI32180.1
Related to COX11-cytochrome-c oxidase assembly protein.
    
 
 0.933
SSCI14640.1
Probable GTP-binding protein ypt5.
    
 
 0.890
SSCI62620.1
Related to GTP-binding protein Rab5c.
    
 
 0.890
SSCI30100.1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 
 0.543
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.