STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI58760.1Probable SEC22-synaptobrevin (V-SNARE); Belongs to the synaptobrevin family. (226 aa)    
Predicted Functional Partners:
SSCI58450.1
Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.
    
 0.998
SSCI47170.1
Probable syntaxin, vesicular transport protein.
   
 0.998
SSCI59980.1
t-SNARE coiled-coil homology domain-containing protein.
   
 0.997
SSCI60080.1
Probable YKT6-SNARE protein for Endoplasmic Reticulum-Golgi transport; Belongs to the synaptobrevin family.
    
 0.994
SSCI27900.1
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.989
SSCI15840.1
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.989
SSCI03070.1
Probable SEC17-transport vesicle fusion protein.
   
 0.989
SSCI71880.1
Probable SEC24-COPII coated vesicle component.
    
 0.988
SSCI84820.1
Uncharacterized protein.
   
 0.984
SSCI44210.1
Uncharacterized protein.
    
 0.984
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.