STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI40100.1Uncharacterized protein. (234 aa)    
Predicted Functional Partners:
SSCI67550.1
RNA helicase.
   
 
 0.959
SSCI64040.1
Related to DIP2-Dom34p-interacting protein.
   
   0.955
SSCI38180.1
KH domain-containing protein.
   
 
 0.947
SSCI00920.1
Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.
   
   0.941
SSCI03410.1
Uncharacterized protein.
   
   0.940
SSCI09590.1
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.940
SSCI02850.1
Related to NOC4-nucleolar protein, mediates maturation and nuclear export of 40S ribosomal subunits.
   
   0.940
SSCI49450.1
Uncharacterized protein.
   
 
 0.938
SSCI07720.1
Related to atp-dependent rna helicase.
   
   0.937
SSCI20770.1
Related to RRP9-protein associated with the U3 small nucleolar RNA.
   
   0.936
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.