STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI37670.1RRM domain-containing protein. (389 aa)    
Predicted Functional Partners:
SSCI67690.1
Uncharacterized protein.
   
 0.963
SSCI60640.1
Related to mRNA export factor mex67.
    
 0.957
SSCI82800.1
Probable translation initiation factor eIF-4A.
   
 0.953
SSCI52680.1
Fungal_trans domain-containing protein.
   
 0.935
SSCI63150.1
Uncharacterized protein.
   
 0.913
SSCI13810.1
Related to 80 kDa nuclear cap binding protein.
    
 0.896
SSCI20710.1
Uncharacterized protein.
   
 0.895
SSCI20700.1
Uncharacterized protein.
   
 0.895
SSCI52110.1
Uncharacterized protein.
   
 0.895
SSCI03940.1
Smg4_UPF3 domain-containing protein.
    
 0.879
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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