STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI74200.1Uncharacterized protein. (922 aa)    
Predicted Functional Partners:
SSCI20310.1
Uncharacterized protein.
    
 0.749
SSCI64740.1
DNA polymerase.
   
 0.729
SSCI13260.1
Related to MUS81-endonuclease involved in DNA repair and replication fork stability.
    
 0.726
SSCI37410.1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.704
SSCI25100.1
Probable Small nuclear ribonucleoprotein F.
    
  0.700
SSCI43530.1
Small nuclear ribonucleoprotein Sm D2.
    
 0.685
SSCI35700.1
Sm domain-containing protein.
    
  0.682
SSCI72130.1
ERCC4 domain-containing protein.
    
 0.661
SSCI35330.1
Probable Chromatin assembly factor 1 subunit c.
    
 0.655
SSCI42530.1
Small nuclear ribonucleoprotein Sm D3.
    
 0.626
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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