STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI82340.1Related to Rab geranylgeranyltransferase alpha subunit. (426 aa)    
Predicted Functional Partners:
SSCI70140.1
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.998
SSCI60080.1
Probable YKT6-SNARE protein for Endoplasmic Reticulum-Golgi transport; Belongs to the synaptobrevin family.
    
 
 0.868
SSCI82050.1
Probable GTP-binding protein ypt1.
    
 0.865
SSCI66950.1
Uncharacterized protein.
    
 0.857
SSCI49590.1
Uncharacterized protein; Belongs to the SKP1 family.
    
 
 0.828
SSCI83100.1
Probable YPT6-GTP-binding protein of the rab family.
    
 0.818
SSCI14640.1
Probable GTP-binding protein ypt5.
    
 0.810
SSCI62620.1
Related to GTP-binding protein Rab5c.
    
 0.810
SSCI60230.1
Probable GTP-binding protein Rab11.
    
 0.757
SSCI01390.1
Uncharacterized protein.
    
 0.729
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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