STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH36233.1Collagen triple helix repeat-containing protein. (673 aa)    
Predicted Functional Partners:
SHH36251.1
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.
 
     0.614
SHH16589.1
Calx-beta domain-containing protein.
 
 
  0.587
SHG87710.1
Glycosyl transferase family 2.
  
     0.582
SHH36280.1
Methyltransferase, FkbM family.
       0.533
SHG46500.1
Beta-propeller repeat-containing protein.
 
 
  0.494
SHH36206.1
Collagen triple helix repeat-containing protein.
 
    
0.480
SHG46668.1
Ig-like domain (group 2).
  
 
  0.474
SHG77815.1
Arylsulfatase A.
  
     0.459
SHH22930.1
Iron complex outermembrane recepter protein.
  
 
   0.456
SHG66847.1
RHS repeat-associated core domain-containing protein; Manually curated.
  
 
  0.450
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.