STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG43030.1Sigma-54 specific transcriptional regulator, flagellar regulatory protein A. (504 aa)    
Predicted Functional Partners:
SHH03931.1
PAS domain S-box-containing protein.
 
 0.971
SHG43067.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.948
SHG67898.1
PAS domain S-box-containing protein.
  
 0.939
SHG42341.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.925
SHG52562.1
Two-component system, NarL family, sensor histidine kinase BarA.
  
 0.924
SHH05990.1
Signal transduction histidine kinase.
  
 0.905
SHG47184.1
Na+/proline symporter.
  
 0.901
SHH24367.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.849
SHH29836.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.847
SHH21701.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.824
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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