STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG45144.1Ubiquinone/menaquinone biosynthesis C-methylase UbiE. (344 aa)    
Predicted Functional Partners:
SHG42047.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
 
 
 0.885
SHG98739.1
Amino acid adenylation domain-containing protein.
  
 0.710
SHG92389.1
Phytoene dehydrogenase-related protein.
 
 
 0.704
SHG66251.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.586
SHG45119.1
Hypothetical protein.
       0.565
SHG42025.1
Acyl transferase domain-containing protein; Belongs to the P-Pant transferase superfamily.
 
  
 0.554
SHH34981.1
Cytochrome P450.
    
 0.531
SHH04074.1
Hypothetical protein; Belongs to the cytochrome P450 family.
    
 0.531
SHH04248.1
Cytochrome P450.
    
 0.531
SHG93702.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
  
  0.429
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.