STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG48168.1Uncharacterized protein. (336 aa)    
Predicted Functional Partners:
SHG48150.1
Predicted exporter protein, RND superfamily.
 
    0.952
SHH11927.1
Hypothetical protein.
 
    0.823
SHH20680.1
Hypothetical protein.
 
    0.823
SHG53514.1
Protein of unknown function.
 
    0.816
SHG68779.1
Protein of unknown function.
    0.814
SHG82634.1
Protein of unknown function.
 
    0.814
SHG99692.1
Protein of unknown function.
    0.814
SHH04053.1
Protein of unknown function.
    0.814
SHH20656.1
Protein of unknown function.
 
    0.814
SHG87529.1
Protein of unknown function.
 
    0.811
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.