Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG51218.1 | SHG51252.1 | SAMN04488068_0518 | SAMN04488068_0520 | Putative ATPase. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.865 |
SHG51218.1 | SHG51293.1 | SAMN04488068_0518 | SAMN04488068_0522 | Putative ATPase. | Hypothetical protein. | 0.440 |
SHG51218.1 | aat | SAMN04488068_0518 | SAMN04488068_0523 | Putative ATPase. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.452 |
SHG51218.1 | bpt | SAMN04488068_0518 | SAMN04488068_0524 | Putative ATPase. | arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | 0.450 |
SHG51218.1 | lolA | SAMN04488068_0518 | SAMN04488068_0519 | Putative ATPase. | Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.836 |
SHG51252.1 | SHG51218.1 | SAMN04488068_0520 | SAMN04488068_0518 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Putative ATPase. | 0.865 |
SHG51252.1 | SHG51278.1 | SAMN04488068_0520 | SAMN04488068_0521 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Hypothetical protein. | 0.497 |
SHG51252.1 | SHG51293.1 | SAMN04488068_0520 | SAMN04488068_0522 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Hypothetical protein. | 0.543 |
SHG51252.1 | aat | SAMN04488068_0520 | SAMN04488068_0523 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.575 |
SHG51252.1 | bpt | SAMN04488068_0520 | SAMN04488068_0524 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | 0.569 |
SHG51252.1 | infA | SAMN04488068_0520 | SAMN04488068_0525 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.486 |
SHG51252.1 | lolA | SAMN04488068_0520 | SAMN04488068_0519 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.792 |
SHG51278.1 | SHG51252.1 | SAMN04488068_0521 | SAMN04488068_0520 | Hypothetical protein. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.497 |
SHG51278.1 | SHG51293.1 | SAMN04488068_0521 | SAMN04488068_0522 | Hypothetical protein. | Hypothetical protein. | 0.780 |
SHG51278.1 | aat | SAMN04488068_0521 | SAMN04488068_0523 | Hypothetical protein. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.788 |
SHG51278.1 | bpt | SAMN04488068_0521 | SAMN04488068_0524 | Hypothetical protein. | arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | 0.778 |
SHG51278.1 | infA | SAMN04488068_0521 | SAMN04488068_0525 | Hypothetical protein. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.610 |
SHG51293.1 | SHG51218.1 | SAMN04488068_0522 | SAMN04488068_0518 | Hypothetical protein. | Putative ATPase. | 0.440 |
SHG51293.1 | SHG51252.1 | SAMN04488068_0522 | SAMN04488068_0520 | Hypothetical protein. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.543 |
SHG51293.1 | SHG51278.1 | SAMN04488068_0522 | SAMN04488068_0521 | Hypothetical protein. | Hypothetical protein. | 0.780 |
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