STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG53258.1Transcriptional regulator, TetR family. (205 aa)    
Predicted Functional Partners:
SHG53242.1
Hypothetical protein.
 
     0.675
SHG53218.1
Hypothetical protein.
       0.594
SHG80905.1
Transcriptional regulator, TetR family.
  
     0.564
SHG53278.1
Predicted thiol-disulfide oxidoreductase YuxK, DCC family.
       0.531
SHG53302.1
TatD DNase family protein.
       0.531
SHG53197.1
Hypothetical protein.
       0.494
SHH14217.1
AraC-type DNA-binding protein.
  
     0.460
SHG67898.1
PAS domain S-box-containing protein.
    
 
 0.451
SHG97154.1
Transcriptional regulator, TetR family.
  
     0.447
SHG50320.1
Transcriptional regulator, TetR family.
  
     0.427
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.