STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG53767.1Cytochrome c556. (155 aa)    
Predicted Functional Partners:
SHG53756.1
Cytochrome b.
 
     0.895
SHG53812.1
Peroxiredoxin.
 
     0.744
SHG53731.1
Gluconolactonase.
 
     0.697
SHG53793.1
Hypothetical protein; Manually curated.
       0.676
SHG53855.1
Protein of unknown function.
 
     0.592
SHG53832.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.569
SHG53875.1
Protein of unknown function.
 
     0.504
SHH16973.1
Protein of unknown function.
  
     0.476
SHH23872.1
Hypothetical protein.
  
     0.444
SHG49270.1
Flagellar protein FlaG.
  
     0.435
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.