STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG53832.1Outer membrane receptor proteins, mostly Fe transport. (952 aa)    
Predicted Functional Partners:
SHG53855.1
Protein of unknown function.
 
     0.812
SHG48693.1
FecR family protein.
 
  
 0.761
SHG94565.1
FecR family protein.
 
  
 0.755
SHG53875.1
Protein of unknown function.
 
     0.751
SHG77097.1
TonB-dependent Receptor Plug Domain.
  
 
 0.720
SHG53731.1
Gluconolactonase.
 
     0.686
SHG48709.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.630
SHG94590.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.619
SHG65920.1
Iron complex outermembrane recepter protein.
  
  
  0.592
SHG49634.1
Protein TonB.
  
   0.588
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.