STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG54094.1Two-component system, OmpR family, KDP operon response regulator KdpE; Manually curated. (230 aa)    
Predicted Functional Partners:
SHG42341.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.998
SHG67898.1
PAS domain S-box-containing protein.
 
 0.997
SHH03931.1
PAS domain S-box-containing protein.
 0.997
SHG52562.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 0.993
SHG47184.1
Na+/proline symporter.
  
 0.978
SHG54074.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
 0.977
SHH15007.1
GAF domain-containing protein.
  
 0.972
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
    
   0.964
SHH05990.1
Signal transduction histidine kinase.
 
0.939
SHG81074.1
Signal transduction histidine kinase.
  0.921
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.