STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG69718.1Iron complex outermembrane recepter protein. (867 aa)    
Predicted Functional Partners:
SHG69739.1
Uncharacterized conserved protein, DUF2147 family.
       0.773
SHG77097.1
TonB-dependent Receptor Plug Domain.
  
  
 0.714
SHH04689.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.712
SHG44108.1
Parallel beta-helix repeat-containing protein.
  
     0.701
SHG99463.1
Hypothetical protein.
  
     0.675
SHG48604.1
Iron complex outermembrane recepter protein.
  
  
 0.672
SHH16845.1
Hypothetical protein.
  
     0.667
SHG69697.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.586
SHG63244.1
Vitamin B12 transporter.
  
   
 0.560
SHH20116.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.548
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.