STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG70871.1Hypothetical protein. (649 aa)    
Predicted Functional Partners:
SHH04762.1
Beta-carotene hydroxylase.
  
     0.725
SHH24586.1
Predicted metal-dependent hydrolase.
  
     0.679
SHH04502.1
Transcriptional regulator, TetR family.
  
     0.542
SHG54259.1
Transcriptional regulator, TetR family.
  
     0.531
SHG53242.1
Hypothetical protein.
  
     0.491
SHG71449.1
Transcriptional regulator, TetR family.
  
     0.477
SHG82542.1
Alpha/beta hydrolase family protein.
  
     0.470
SHG83318.1
Outer membrane protein (porin).
  
     0.430
SHG70888.1
Protein of unknown function, DUF488.
       0.404
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.