STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG77097.1TonB-dependent Receptor Plug Domain. (958 aa)    
Predicted Functional Partners:
SHG65456.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 0.803
SHH12340.1
Iron complex outermembrane recepter protein.
  
 
 0.801
SHG81524.1
Iron complex outermembrane recepter protein.
  
 
 0.791
SHG95335.1
Iron complex outermembrane recepter protein.
  
 
 0.762
SHH22930.1
Iron complex outermembrane recepter protein.
  
 
 0.756
SHG77126.1
Tetratricopeptide repeat-containing protein.
 
     0.724
SHG53832.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 0.720
SHG69718.1
Iron complex outermembrane recepter protein.
  
  
 0.714
SHH16222.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.705
SHG97548.1
Iron complex outermembrane recepter protein.
  
 
 0.659
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.