Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG65235.1 | pdxH | SAMN04488068_0941 | SAMN04488068_1438 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.530 |
SHG68108.1 | pdxH | SAMN04488068_1074 | SAMN04488068_1438 | Choline dehydrogenase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.493 |
SHG80288.1 | SHG80327.1 | SAMN04488068_1437 | SAMN04488068_1439 | Peptidase family M48. | PAS domain S-box-containing protein. | 0.610 |
SHG80288.1 | pdxH | SAMN04488068_1437 | SAMN04488068_1438 | Peptidase family M48. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.697 |
SHG80327.1 | SHG80288.1 | SAMN04488068_1439 | SAMN04488068_1437 | PAS domain S-box-containing protein. | Peptidase family M48. | 0.610 |
SHG80327.1 | pdxH | SAMN04488068_1439 | SAMN04488068_1438 | PAS domain S-box-containing protein. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.625 |
SHH22464.1 | pdxH | SAMN04488068_2954 | SAMN04488068_1438 | Hypothetical protein. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.583 |
carA | carB | SAMN04488068_2415 | SAMN04488068_2413 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.999 |
carA | pdxH | SAMN04488068_2415 | SAMN04488068_1438 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.554 |
carA | pyrB | SAMN04488068_2415 | SAMN04488068_2980 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carB | carA | SAMN04488068_2413 | SAMN04488068_2415 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.999 |
carB | pdxH | SAMN04488068_2413 | SAMN04488068_1438 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.582 |
carB | pyrB | SAMN04488068_2413 | SAMN04488068_2980 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
nnrD | pdxH | SAMN04488068_2509 | SAMN04488068_1438 | NAD(P)H-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of bot [...] | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.558 |
pdxH | SHG65235.1 | SAMN04488068_1438 | SAMN04488068_0941 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.530 |
pdxH | SHG68108.1 | SAMN04488068_1438 | SAMN04488068_1074 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Choline dehydrogenase. | 0.493 |
pdxH | SHG80288.1 | SAMN04488068_1438 | SAMN04488068_1437 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Peptidase family M48. | 0.697 |
pdxH | SHG80327.1 | SAMN04488068_1438 | SAMN04488068_1439 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | PAS domain S-box-containing protein. | 0.625 |
pdxH | SHH22464.1 | SAMN04488068_1438 | SAMN04488068_2954 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Hypothetical protein. | 0.583 |
pdxH | carA | SAMN04488068_1438 | SAMN04488068_2415 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.554 |
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