STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG85154.1Hypothetical protein. (486 aa)    
Predicted Functional Partners:
SHG85174.1
Hypothetical protein.
 
    
0.821
SHG85298.1
Hypothetical protein.
  
     0.772
SHG77605.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
     
 0.630
SHG85132.1
Hypothetical protein.
       0.581
SHG84923.1
Capsular polysaccharide transport system permease protein.
 
     0.550
SHG85107.1
Hypothetical protein.
       0.531
SHG85023.1
Hypothetical protein.
 
     0.499
SHG84965.1
ABC-type polysaccharide/polyol phosphate export permease.
 
     0.464
SHG53278.1
Predicted thiol-disulfide oxidoreductase YuxK, DCC family.
   
 0.445
SHG84954.1
Capsular polysaccharide transport system ATP-binding protein.
 
     0.430
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.