STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG86939.1Beta-hydroxylase. (272 aa)    
Predicted Functional Partners:
SHH34544.1
heptose-I-phosphate ethanolaminephosphotransferase.
     
 0.596
mpl
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.559
SHG86913.1
Hypothetical protein.
       0.545
SHG62463.1
FKBP-type peptidyl-prolyl cis-trans isomerase FklB.
     
 0.496
SHG84536.1
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA.
     
 0.496
SHG77885.1
KDO2-lipid IV(A) lauroyltransferase.
  
  
 0.440
SHG77147.1
Tfp pilus assembly protein PilF.
 
    0.433
SHG94613.1
Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain.
  
   
 0.419
SHG77815.1
Arylsulfatase A.
  
  
  0.410
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.