STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG98875.1Succinoglycan biosynthesis protein ExoM. (303 aa)    
Predicted Functional Partners:
SHG98816.1
O-antigen ligase.
 
  
 0.901
SHG98894.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
    
 0.824
SHG98913.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.787
SHG98935.1
Hypothetical protein.
 
     0.786
SHG98855.1
Hypothetical protein.
  
    0.775
SHG99009.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.724
SHG98953.1
Acetyltransferase (GNAT) domain-containing protein.
     
 0.670
SHG98837.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
     
 0.585
SHG85495.1
Glycosyl transferase family 2.
  
 
 0.561
SHG93012.1
Glycosyltransferase, GT2 family.
  
 
 0.561
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.