STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH04289.14-carboxymuconolactone decarboxylase. (129 aa)    
Predicted Functional Partners:
SHH12238.1
SnoaL-like domain-containing protein.
 
  
  0.818
SHH04268.1
Cycloeucalenol cycloisomerase.
 
     0.807
SHG82923.1
SnoaL-like domain-containing protein.
  
  
  0.771
SHH12185.1
Glutaconate CoA-transferase subunit A.
 
 
 0.740
SHH12174.1
Glutaconate CoA-transferase subunit B.
 
 
 0.739
SHH04248.1
Cytochrome P450.
  
  
 0.721
SHG48052.1
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
     0.702
SHH03951.1
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
     0.699
SHG45019.1
Sulfotransferase family protein.
  
     0.639
SHH12094.1
Hypothetical protein.
  
  
  0.627
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
Server load: low (18%) [HD]