STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH04892.1Type IV pilus assembly protein PilZ. (119 aa)    
Predicted Functional Partners:
SHG50658.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 
   0.988
SHH07253.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
   
  0.987
SHG48264.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
   
   0.985
SHH24367.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
   0.984
SHH29836.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
   0.984
SHG61874.1
Type IV pilus assembly protein PilM.
  
   
 0.815
SHG61804.1
Type IV pilus assembly protein PilP.
  
   
 0.804
SHG61847.1
Type IV pilus assembly protein PilN.
  
   
 0.803
SHG61780.1
Type IV pilus assembly protein PilQ.
  
   
 0.800
SHG61825.1
Type IV pilus assembly protein PilO.
  
   
 0.799
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.