STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH16761.1Zinc carboxypeptidase. (602 aa)    
Predicted Functional Partners:
SHH16785.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
       0.693
SHH16801.1
Hypothetical protein.
       0.693
SHG78083.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.651
SHH24064.1
Dipeptidyl-peptidase 7. Serine peptidase. MEROPS family S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.615
SHH16825.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.604
SHH16845.1
Hypothetical protein.
       0.604
SHH16222.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.587
SHH16183.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.569
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.567
SHG99009.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
   
    0.561
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.