STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH22889.1Protein of unknown function. (822 aa)    
Predicted Functional Partners:
SHG98482.1
Protein of unknown function.
  
     0.601
SHH22837.1
Uncharacterized membrane protein.
       0.586
SHH22862.1
Acylpyruvate hydrolase.
       0.586
SHH22813.1
Predicted arabinose efflux permease, MFS family.
       0.570
SHH23287.1
Imidazolonepropionase.
  
     0.560
SHG78083.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.519
SHH07290.1
Carboxypeptidase Ss1. Metallo peptidase. MEROPS family M20D.
  
     0.497
SHG98454.1
Predicted Zn-dependent protease or its inactivated homolog.
  
     0.485
SHG98437.1
TldD protein.
  
     0.469
SHH23445.1
HlyD family secretion protein.
  
     0.455
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.