STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH24141.1Putative N-acetyltransferase, MSMEG_0567 N-terminal domain family. (189 aa)    
Predicted Functional Partners:
SHH24124.1
Hypothetical protein.
     0.979
SHH24178.1
Aliphatic nitrilase.
 
  
  0.960
SHH24159.1
Radical SAM protein, MSMEG_0568 family; Non-canonical start codon; manually curated.
 
   
 0.959
SHH24086.1
Putative flavoprotein involved in K+ transport.
 
     0.953
SHH24102.1
MSMEG_0570 family protein.
 
     0.953
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
    
 0.831
SHH24210.1
MSMEG_0572 family protein.
 
   
 0.824
SHH24236.1
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.
 
     0.688
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
  0.566
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.451
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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