STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH24178.1Aliphatic nitrilase. (345 aa)    
Predicted Functional Partners:
SHH24102.1
MSMEG_0570 family protein.
 
 
  0.962
SHH24086.1
Putative flavoprotein involved in K+ transport.
 
 
  0.961
SHH24141.1
Putative N-acetyltransferase, MSMEG_0567 N-terminal domain family.
 
  
  0.960
SHH24124.1
Hypothetical protein.
 
   
 0.953
SHH24159.1
Radical SAM protein, MSMEG_0568 family; Non-canonical start codon; manually curated.
 
     0.952
SHG61599.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.834
SHH24210.1
MSMEG_0572 family protein.
 
     0.816
SHG67771.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.783
SHH28843.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.776
SHG87632.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
 
 0.671
Your Current Organism:
Hydrocarboniphaga daqingensis
NCBI taxonomy Id: 490188
Other names: CGMCC 1.7049, H. daqingensis, Hydrocarboniphaga daqingensis Liu et al. 2011, Hydrocarboniphaga sp. B2-9, NBRC 104238, strain B2-9
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